There are lots of approaches. You can follow section "5.1.6 Touch Off the Workiece to Set Work Offsets" on page 51 of the manual at https://www.tormach.com/support/wpdm...nual-0916a-web. Insert your dial indicator tool. Ensure that the tool length is set to zero. Lower the indicator onto the same surface used in the first step until it reads your usual reference value. Note the Z-axis reading and enter that as the length of the dial indicator tool.
A slightly more convenient approach is to use an accurately measured tool to surface a piece of scrap stock. Set the Z-DRO to zero. Change to the dial indicator tool, set its tool length to zero and lower the indicator onto the machined surface until it reads appropriately. Set the tool length to the current Z-DRO reading.