depending on the manufacturer , stepper motor data sheets I have read usually give the maximum temperature of 70 to 80C (158F to 176F)
so 98C / 208F is too hot and I expect the Y axis driver is set to too high a motor current
have you ever had the system working correctly ?
are the stepper drivers set to the correct motor current ?
if the three stepper motors are the same
check the Y axis driver is set to the same current as the other axis
do you have a manual giving the details of how the drivers should be setup ?
photos of the stepper drivers inside of the control box , the motor connectors and part numbers of the stepper motors will be useful
John