Hi Robert,
From K2CNC's comment in:
\KFLOP rob505\KFLOP\Driver\k2mc_driver.c
It seems they are expecting this arrangement of User Programs being Flashed in KFLOP.
//----------------------------------------------------------------
// KFLOP Initialize program
// K2CNC - Copyright 2013
// Version: 2.0.4
//
// - K2mc_driver.c -> Thread 6
// - homing.c -> Thread 5
// - toolchange.c -> Thread 4
// - bitJog_sLimit.c -> Thread 1
Have you tried that?
You should realize that the programs loaded and shown in the KMotion.exe Threads are not necessarily the Programs actually downloaded or Flashed into KFLOP.
Regards