I'm actually almost done. This post will be like light speed. I stopped taking pictures because, well, because I did.
I decided to build the Y axis and X axis as separate standalone units, to be tied together at the end by the gantry.
cnc-10 by lukepighetti, on Flickr
Underside of my x axis. Not proud of this one. Hard to get the precision required to do a fantastic job down here, so I didn't bother. ended up working just fine. I'll redo this in version 2
cnc-11 by lukepighetti, on Flickr
Here are pictures of some round shim stock I found in the basement. I have a coffee can full of them and they are fantastic for setting the rods into the holes made by my 5/8" forstner bit. They also allow you to align them properly by moving the carriage as close to the end as possible and use the shim stocks to feel where the largest gap in the inside diameter is, then you punch them in with a hammer and it sets perfectly. Worked AWESOME
cnc-12 by lukepighetti, on Flickr
Just getting the gantry mocked up
cnc-13 by lukepighetti, on Flickr
All bolted together. It's incredibly solid except for forces axial to the Y axis at the top of the unit. There is quite a bit of deformation of the frame with these loads. I don't see it being an issue, but I will be solving this problem tomorrow with gussets.