You need to use an ADJUSTABLE voltage DC power supply, sometimes called a "DC bench supply".
Connect the 2 windings in parallel so they get equal current, then slowly turn up the voltage until the windings are operating at the specified current (ie 6.2A each, so thats 12A total). I was under the impression you were working at a Uni? I'm sure one of the electrical guys will have access to a decent sized DC supply.
Once the motor is at specified current, you can test the torque as shown on the web link I posted. Then reconnect the wires the 4 possible ways to test all 4 "full step" positions.
The fault normally experienced after disassembling steppers is that the pole alignment is no longer optimal, and the symptom is much reduced torque at one or more of the full step positions. Often this can be discerned by hand just by turning the motor, you can feel significantly less detent torque (ie it seems to turn smoothly after being disassembled).
It's almost impossible to realign them if they go out, which is a shame. However some of the newer style motors have the multiple stator stacks well glued together so you may have gotten away with the disassembly without wrecking it's torque too much (get your nun to pray!).