Hi Glen,
I have that box. A couple of notes. The JP-382A board has the home switch header to the left of the stop header (which is to the left of the JP-382A silkscreen label). The XYZG are the X, Y, Z, and common ground pins, respectively. I don't recall the DB-25 pin #s for these. I can check. Also of note is the PWM out header on the board and corresponding header on the power/spindle board (JP-1482?). I suspect that the spindle board can be configured to take its PWM signal from the DB-25, e.g. whitequark's lab notebook
The LED display header on the spindle board looks like ti might be SPI controlled? I haven't really had a chance to put a logic probe on that yet.