If it will create new files where none currently exist, then this should be easy using an custom external program.
If I understood the way these work, then..... Let the device write the file(s) to disk or even to ram, then read the file(s) and store that data into some kind of database (could just be a text file). Then delete the device created file(s) before the next part.is measured. That should allow you to separate the data and also append any identifying data you want to the measurements.