It's probably resonance, like I mentioned before. A lot of people running that combo have similar problems.
Couple things.
Make sure the pulse width is set to 2 or 3 in the motor tuning. Run the driver test and make sure you get good results. Make sure the screws are not binding at all. You could also try changing to 1/4 or 1/2 stepping and see if that helps.
As was mentioned, you can try Mach2, and it may work better for you on the slower PC.


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that when I attached the acme nuts I had just alittle thread from the bolts sticking into the leadscrew nut. I ran a tap threw them acouple of times and they ran alot better but I ran into whipping then so that is when I scrapped everything. Best I ever got with the original setup was 26 ipm y 16 ipm x and z I didnt really pay attention. 