Both of the settings you are referring to are done in the Torchmate
CAD software. The cut Direction is set in the Toolpathing options when you are creating the tool path. There are two selections, Climbing and Conventional on the Basic Cut Tab. For plasma you would want Climbing because it keeps the right hand side of the torch moving away from you, on the keep piece of material, for your best dross and bevel.
Now the cut Order is set after toolpathing, either via the Start Sequence option, or you can enable the Show Toolpath Viewer under the View menu, on that screen there is a checkbox for Show Order. If you check this, each individual toolpath has a number assigned to it, which you can edit. 1 will cut first, then 2, then 3, etc...