Hardware wise there is no difference. It's the same machine. Where the difference comes in is with the electronic and stepper motors. The DSLS3000 has added encoders to the stepper motors and the electronics to ensure each axis has actually moved to the right place. At a quick glance this seems to be a good improvement. Making the stepper motors closed loop should ensure that there are no missed steps? The problem is that the computer driving things knows nothing about the state of each axis, resulting in Cornering on the DSLS3000. Yes the DSLS3000 controller can drive the machine over twice as fast as the basic 2000LE, but only with care as any change in direction can start before the mill itself has caught up.
The comparison asked was to the Deepgrove package which uses a gecko driver, and using similar sized motors, the bipolar drivers get more power out of them than the unipolar driver in the Microproto controllers. It is only because the the Microproto is still half stepping that the closed loop 'upgrade' can be made, as it basically keeps driving one phase of the motor until it detects it has moved. The buffer that makes this work can be up to 200 steps behind the other axies so positional accuracy is compromised.
Personally I do not like the 1/10th stepping mode which is all the gecko driver provides. It may seem to provide finer accuracy over 1/2 stepping, but in practice 7 or 8 of the sub-steps are on one half of the cycle and only 2 or 3 on the other. My own preference currently is some of the new 3Nm NEMA23 motors along with a 4.2Amp quarter stepping driver which results in the same top speed as the DSLS3000 but without the cornering problem, and pretty accurate 1/16th thou step size. Those clients that have upgraded find that the results are an improvement over the 1/8th thou steps of the original setups when re-cutting the same jobs they had cut previously.
There is little to better the Taig mill currently, but it does benefit from a better control system.
Deepgrove got bad press in the past due to cost cutting with the Xylotex drivers, but have learnt ...