I tried it here and confirmed that the first tool is not showing up in the tool list, don't know what's going there yet.
To have motion back to home position show up correctly you should set the work offsets in the machine configuration. Go to "Setup / Machine Configuration" then click the "Work Offsets" page. Set X and Z values for the G54 (or whatever offsets you use). You can then use the menu "Draw / Axis Lines" to set where the zero lines are displayed.