The fact you are getting 51 AC converts to 72DC which is close to your final DC output, so I would guess that your AC is too high, if you measured the AC into the rectifier you should have around 35vAC allowing for bridge drop for 48vDC.
Did you swop the primaries over when you wire the switch in as you may have gone from a 'buck' condition to a 'boost' condition by wiring them out in phase and prior they may have been out of phase.
Al


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