Camworks generates the tool paths.
When you simulate the tool path in camworks, you see the second to last thing camworks does for you.
The last step in the process is generating the GCode. You have to tell camworks what type of CNC machine yu use. It will then use a file called a Postprocessesor to convert the toolpaths to make g-code.
In order to get gcode to suit your CNC machine you have to modify this postprocessor file.
Camworks has a program hidden in the directory to do this. the program is called UPG. do a search for "post.exe"
UPG will allow you to customise your Gcode.
The bad news is that you will have to do more "learning the hard way"
what type of machine do you have?