This is happening while you're jogging manually, right?
It's a bug. The solution is, don't do that. Jog one axis at a time and you'll be OK. In my experience, the problem happens when jogging, but not when running g-code.
A better solution is to eliminate the backlash on your machine so that you can run without backlash compensation. Backlash comp is a band-aid solution anyway. It's better to eliminate the slop in the machine.